So as I have modified the batteries without using the onboard chip but the batteries fail to work in these tools!
There were multiple solutions to this!
Solution #1The first solution was to link the Positive rail and the control pin so that there is voltage on the pin so it will work in the tool. The only problem in my case was some of the chips had the small pin and still did not work as they were not making connection!
Modifying the tool. This was something i didn't want to do but in the end became the easier method. Because i had several batteries that had the older style board with the shorter control pin it seemed to be the logical method. However i will look into fixing the board so that my batteries will work in everyone's tools not just my own modified ones.
This picture shows the modification of the tool.